PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028853m
Common NameCICLE_v10028853mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 319aa    MW: 34194.5 Da    PI: 7.9167
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028853mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00052132154123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C++sF++   L  H  +H
  Ciclev10028853m 132 YECKTCNRSFPSFQALGGHRASH 154
                      99**********99999998887 PP

2zf-C2H213.20.00028227249123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  Ciclev10028853m 227 HECSICGSEFTSGQALGGHMRRH 249
                      78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-13131156IPR007087Zinc finger, C2H2
SuperFamilySSF576674.35E-9131154No hitNo description
PROSITE profilePS5015710.72132159IPR007087Zinc finger, C2H2
SMARTSM003550.06132154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SuperFamilySSF576674.35E-9222249No hitNo description
Gene3DG3DSA:3.30.160.605.2E-4223249IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.1E-11227251IPR007087Zinc finger, C2H2
SMARTSM003550.019227249IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827227254IPR007087Zinc finger, C2H2
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MIMGSSSNDH QNNQIVKGKR TKRQRSTSPF GFAVTDSSSS GNNSGADESY YSNNNNNNSV  60
MSFPTTSGES TEEEDQDMAN CLIMLAQGDD RSRQINQENI IDDKVQKFNA SRKFTTAVTS  120
NNKAGAGGFY VYECKTCNRS FPSFQALGGH RASHKKPKAA LAEAPEKKSS ASVPALAVLP  180
TKNEYKDSYS TLHHHDQSHM QAASAAATAA NNNNTANNNN KGGNKIHECS ICGSEFTSGQ  240
ALGGHMRRHR AAVATGNNIN QVATIESNIG DVKPVAATRS ILPLDLNLPA PEDDHHIRFG  300
ATQQSLVFSA PALVDCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424440.10.0hypothetical protein CICLE_v10028853mg
TrEMBLA0A067EYX50.0A0A067EYX5_CITSI; Uncharacterized protein
TrEMBLV4SFV40.0V4SFV4_9R
STRINGPOPTR_0004s22650.19e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-56C2H2 family protein